Bayern was ordered to pay 20,000 euros ($22,000) for “transmitting a provocative message of an offensive nature” during a Champions League game at Chelsea in February.
Fans unfurled banners in English protesting the “pricing insanity” of clubs charging away fans for tickets.
UEFA also fined Bayern an extra 20,000 euros ($22,000) for crowd disturbances at Stamford Bridge, where the German champion won 3-0 in the first leg of the round of 16. The return game has not been played.
Eintracht fans displayed profane slogans aimed at UEFA and opponent Salzburg at a Europa League game in February.